Installation

From PyPI

pip install meegflow

From source

git clone https://github.com/Picnic-DoC/meegflow.git
cd meegflow
pip install -e .

Docker

The Docker image bundles all system-level dependencies (useful on HPC clusters or when MNE's compiled extensions are hard to install).

git clone https://github.com/Picnic-DoC/meegflow.git
cd meegflow
docker build -t meegflow .

docker run --rm \
    -v /path/to/bids:/data \
    meegflow \
    --bids-root /data \
    --config /app/configs/config_example.yaml \
    --subjects 01 02 \
    --tasks rest

Requirements

• Python ≥ 3.8
• MNE-Python
• MNE-BIDS
• PyYAML
• Rich